Installation¶

# using pip
pip install chromatinhd

# (soon) using conda
conda install -c bioconda chromatinhd

# from github
pip install git+https://github.com/DeplanckeLab/ChromatinHD

To use the GPU, ensure that a PyTorch version was installed with cuda enabled:

In [2]:

import torch

torch.cuda.is_available()  # should return True
torch.cuda.device_count()  # should be >= 1

import torch torch.cuda.is_available() # should return True torch.cuda.device_count() # should be >= 1

Out[2]:

2

If not, follow the instructions at https://pytorch.org/get-started/locally/. You may have to re-install PyTorch.

In [ ]:

hide_output

import chromatinhd as chd

import chromatinhd as chd

Frequently asked questions¶